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SRX3031598: WGS of Salmonella enterica isolate FSL R9-5400
1 ILLUMINA (Illumina MiSeq) run: 992,874 spots, 411.1M bases, 222.5Mb downloads

Design: Nextera XT
Submitted by: Cornell University
Study: Pathogen physiological state has a greater effect on outcomes of challenge and validation studies than strain diversity
show Abstracthide Abstract
Assembly of a collection of Salmonella, L. monocytogenes, shiga toxin-producing E. coli, and rele-vant surrogate, indicator, and index organisms representing national and international strain diversity associated with produce. Evaluate the strains for (i) growth on different produce types and (ii) survival of key produce relevant controls and intervention treatments (e.g., different sanitizers). Expose selected pathogen strains (at least 5 per target pathogen) to different environmental and stress conditions (e.g., different growth phases and water activities; pH stress) and evaluate them for subsequent (i) growth on different produce and fruit products and (ii) survival of key produce relevant controls and intervention treatments.
Library:
Name: FSL R9-5400
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 992,874 spots, 411.1M bases, 222.5Mb
Run# of Spots# of BasesSizePublished
SRR5863018992,874411.1M222.5Mb2018-08-01

ID:
4310188

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